On each exercise I ramp up to working weight with a couple warmups and then do 5x5 at my working weight. I'm doing a two day split with the following breakdown:
Day 1 - Squat, Bench Press, Bent Over Barbell Row
Day 2 - Squat, Seated Barbell Press, Deadlift
On Day 1 I superset Chinups with the Squats and Day 2 I do Pullups (not part of a standard 5x5 but I'm training for endurance races and a tough mudder so helps with my conditioning). At the end of Day 1 I do one or two tricep exercises and after Day 2 I do biceps. I'm lifting 3 days a week (typically MWF) so each workout gets done 3 times every 2 weeks.