These two studies show a discrepancy between the glycemic index and II, one used type II diabetics and the other healthy individuals;
Gannon MC, Nuttall FQ, Krezowski PA, Billington CJ, Parker S. The serum insulin and plasma glucose responses to milk and fruit products in type 2 (non-insulin-dependent) diabetic patients. Diabetologia 1986;29:784-91.
Schrezenmeir J, Tato F, Tato S, et al. Comparison of glycemic response and insulin requirements after mixed meals of equal carbohydrate content in healthy, type-1, and type-2 diabetic man. Klin Wochenschr 1989;67:985-94
This study concluded consuming milk increased risk of insulin resistance;
Lawlor DA, Ebrahim S, Timpson N, Davey Smith G. Avoiding milk is associated with a reduced risk of insulin resistance and the metabolic syndrome: findings from the British Women's Heart and Health Study. Diabet Med. 2005;22:808-11.
This study found whey protein to have a strong insulinogenic effect, greater than milk. It appears that BCAA composition, as well as other insulinogenic aminos, may be the primary culprit in the glycemic index discrepancy. Whey is rapidly absorbed and has a very high BCAA content. BCAA's are metabolized directly in the muscle cells as opposed to the liver, which results in a marked insulin response. This coincides with the results of the famous Boire study comparing whey and casein. Boire concluded that in a fasted state much of the whey aminos were converted to glucose due to its solubility and rapid absorption, which would cause a rise in insulin independent of the BCAA's.
Glycemia and insulinemia in healthy subjects after lactose-equivalent meals of milk and other food proteins: the role of plasma amino acids and incretins
American Journal of Clinical Nutrition, Vol. 80, No. 5, 1246-1253, November 2004